1. The Matrix (fucking duh)
2. The Matrix: Revolutions
3. The Matrix: Reloaded
4. V for Vendetta
5. Batman Begins
6. Wanted
7. Equilibrium
8. Braveheart
9. The Patriot
10. Fight Club
All 10 of these movies left me with a feeling of "Holy fucking shit that was epic" after watching them. That's what I look for in a "Favorite movie". Comedies are good, but I would never rank a comedy above a movie like these.
This list is subject to revision because I know there are movies I liked more than the bottom 2 but I can't think of them right now. Also, I can almost guarantee that The Dark Knight will take 5th place when I see it this Friday, so Fight Club's position on this list is going to be short-lived.